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Sample GSM849300 Query DataSets for GSM849300
Status Public on Dec 14, 2011
Title UW_ChipSeq_GM12868_CTCF
Sample type SRA
Source name GM12868
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: ChIP-seq
cell: GM12868
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.
cell lineage: mesoderm
cell sex: F
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: GM12868/None/Input/std
labexpid: DS10996
labversion: Bowtie 0.12.7
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell
Treatment protocol None
Growth protocol GM12868_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Dec 14, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX111773
BioSample SAMN00765601
Named Annotation GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep1.bigWig
Named Annotation GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdHotspotsRep1.broadPeak.gz 2.0 Mb (ftp)(http) BROADPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdHotspotsRep2.broadPeak.gz 2.3 Mb (ftp)(http) BROADPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdPkRep1.narrowPeak.gz 708.1 Kb (ftp)(http) NARROWPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdPkRep2.narrowPeak.gz 454.0 Kb (ftp)(http) NARROWPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep1.bigWig 86.3 Mb (ftp)(http) BIGWIG
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep2.bigWig 92.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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