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Sample GSM849300 Query DataSets for GSM849300
Status Public on Dec 14, 2011
Title UW_ChipSeq_GM12868_CTCF
Sample type SRA
 
Source name GM12868
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: ChIP-seq
cell: GM12868
cell organism: human
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed.
cell lineage: mesoderm
cell sex: F
antibody: CTCF
antibody antibodydescription: rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: GM12868/None/Input/std
labexpid: DS10996
labversion: Bowtie 0.12.7
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell
Treatment protocol None
Growth protocol GM12868_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Submission date Dec 14, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX111773
BioSample SAMN00765601
Named Annotation GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep1.bigWig
Named Annotation GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdHotspotsRep1.broadPeak.gz 2.0 Mb (ftp)(http) BROADPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdHotspotsRep2.broadPeak.gz 2.3 Mb (ftp)(http) BROADPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdPkRep1.narrowPeak.gz 708.1 Kb (ftp)(http) NARROWPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdPkRep2.narrowPeak.gz 454.0 Kb (ftp)(http) NARROWPEAK
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep1.bigWig 86.3 Mb (ftp)(http) BIGWIG
GSM849300_hg19_wgEncodeUwTfbsGm12868CtcfStdRawRep2.bigWig 92.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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