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Sample GSM849 Query DataSets for GSM849
Status Public on Feb 12, 2002
Title YPD 5 d (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 5 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a79
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 282 152 69 197 45 222 152 245 73 318 .353 0 .081 .747 33 27 1.533 .945 .652 1.058 .407 1164 177 83 98 121 136 .081
2 153 121 643 788 661 134 127 205 1066 1271 .849 0 .729 1.57 57 71 .973 .603 1.028 1.658 .694 950 177 83 98 139 154 .729
3 135 114 27 147 35 120 112 181 56 237 .255 -100 1.472 22 35 .771 .482 1.296 2.074 .244 928 177 83 98 157 172 1.052
4 140 122 374 430 311 134 119 192 502 694 .861 0 .425 .932 45 54 1.203 .745 .832 1.342 .636 928 177 83 98 174 189 .425
5 144 127 2270 3013 2892 141 121 195 4665 4860 .848 0 1.039 1.248 93 95 .785 .487 1.274 2.055 .963 928 177 83 98 192 207 1.039
6 129 118 463 607 493 132 114 184 795 979 .923 0 .78 .984 33 35 .939 .582 1.065 1.717 .988 928 177 83 98 209 224 .78
7 120 108 3 101 123 104 168 163 -.039 -100 1.333 18 16 -.041 919 177 84 99 227 242
8 110 104 93 2 110 91 147 3 150 .091 -100 1.333 14 19 .101 896 177 84 99 245 260
9 148 105 98 5 112 93 150 8 158 .152 -100 1.175 15 20 .125 896 177 84 99 262 277
10 158 106 32 101 8 113 93 150 13 163 .75 -100 .883 22 20 4 2.462 .25 .406 .321 909 177 84 99 280 295 -1.3
11 133 103 13 95 5 123 90 145 8 153 .258 -100 .981 20 24 2.6 1.625 .385 .615 .22 896 177 84 99 298 313 -.7
12 132 105 5 111 15 127 96 155 24 179 .136 -100 1.125 16 25 .333 .208 3 4.8 .135 906 177 84 99 315 330 2.263
13 125 107 7 104 6 112 98 158 10 168 -.02 -100 1 20 23 1.167 .7 .857 1.429 -.023 906 177 84 99 333 348 .515
14 183 106 88 147 96 155 142 .006 -100 .684 13 14 .007 918 177 84 99 350 365
15 189 107 52 104 14 145 90 145 23 168 .87 -100 .552 14 19 3.714 2.261 .269 .442 .146 950 177 84 99 368 383 -1.177
16 175 105 95 6 133 89 144 9 153 .01 -100 .778 14 20 .009 928 177 84 99 386 401
17 120 103 98 7 106 91 147 11 158 .109 -100 1.073 10 19 .123 928 177 84 99 403 418
18 124 103 114 20 111 94 152 32 184 .051 -100 1.833 13 28 .064 928 177 84 99 421 436
19 112 101 9 111 19 113 92 148 31 179 .183 -100 .667 18 24 .474 .29 2.111 3.444 .177 928 177 84 99 438 453 1.784
20 115 101 4 99 4 119 95 153 7 160 .079 -100 1.111 16 18 1 .571 1 1.75 .069 950 177 84 99 456 471 .807

Total number of rows: 9216

Table truncated, full table size 1089 Kbytes.




Supplementary data files not provided
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