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Status
Public on Jan 20, 2012
Title
HCC1187, copy number variation SNP6.0 WYETH_BREAST
Sample type
genomic
Source name
HCC1187
Organism
Homo sapiens Characteristics
cell line: HCC1187
Extracted molecule
genomic DNA
Extraction protocol
DNA were isolated using an DNeasy kit (Qiagen, Germantown, MD).
Label
biotin
Label protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Hybridization protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Scan protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Data processing
Affymetrix SNP6.0 data were processed using the aroma.affymetrix R package according to the methods of H. Bengtsson et al., (Bengtsson, Irizarry et al. 2008 [PMID 18204055]).
Submission date
Dec 09, 2011
Last update date
Jan 20, 2012
Contact name
Keith A Ching
E-mail(s)
keith.ching@pfizer.com Organization name
Pfizer, Inc.
Department
Computational Sciences
Street address
10777 Science Center Dr.
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL6801 Series (1)
GSE34211 Pfizer Molecular Profile Data for Cell Lines
Data table header descriptions ID_REF PROBE_DESIGN_ID
VALUE Normalized probeset summaries CES (chip effects set)
Data table ID_REF VALUE SNP_A-2131660
3929.64599609375
SNP_A-1967418
1245.92126464844
SNP_A-1969580
6158.3916015625
SNP_A-4263484
4608.56103515625
SNP_A-1978185
2437.51977539062
SNP_A-4264431
2719.93041992188
SNP_A-1980898
2429.61376953125
SNP_A-1983139
3577.98706054688
SNP_A-4265735
1181.33923339844
SNP_A-1995832
1627.95947265625
SNP_A-1995893
3712.23486328125
SNP_A-1997689
4768.6103515625
SNP_A-1997709
2319.095703125
SNP_A-1997896
5163.73046875
SNP_A-1997922
1797.38122558594
SNP_A-2000230
3211.13818359375
SNP_A-2000332
7154.50732421875
SNP_A-2000337
4174.826171875
SNP_A-2000342
2991.00708007812
SNP_A-4268172
758.250427246094
1877772 52564 Kbytes .Supplementary file Size Download File type/resource GSM847320_HCC1187.CEL.gz
31.2 Mb
(ftp) (http) CEL
Processed data included within Sample table
