NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM84665 Query DataSets for GSM84665
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 13 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 13 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 120 133 57 51 51 12 87 158 170 48 104 104 18 66 1.278 1.242 1.477 1.389 2.685 1.295 0.355 0 1.278 1.278
2 46 47 13 51 51 13 2 106 107 13 104 104 12 4 -2.500 -1.333 1.025 1.156 3.347 1.228 0.004 -50 -2.500
3 60 63 21 51 51 13 20 173 181 43 104 104 13 92 0.130 0.156 0.254 0.243 2.872 0.162 0.132 0 0.130 0.130
4 1269 1453 737 51 51 12 98 797 879 295 104 104 13 100 1.758 1.809 1.893 1.692 2.171 2.279 0.584 0 1.758 1.758
5 206 211 80 51 51 14 95 197 202 45 104 104 13 96 1.667 1.633 1.713 1.657 2.149 2.049 0.494 0 1.667 1.667
6 66 70 26 51 51 14 28 108 109 19 104 104 13 11 3.750 3.800 1.037 1.196 4.531 42.360 0.000 0 3.750 3.750
7 124 142 75 51 51 12 85 526 606 246 104 104 12 100 0.173 0.181 0.184 0.171 1.978 0.142 0.424 0 0.173 0.173
8 350 431 253 51 51 13 93 474 518 231 104 104 14 94 0.808 0.918 0.907 0.910 2.424 0.929 0.575 0 0.808 0.808
9 81 85 30 51 51 13 56 133 137 24 104 104 14 53 1.034 1.030 0.950 0.987 2.819 2.266 0.118 0 1.034 1.034
10 94 108 54 51 51 13 67 176 178 39 104 104 14 91 0.597 0.770 0.745 0.695 2.606 1.036 0.350 0 0.597 0.597
11 74 77 29 51 51 12 43 134 134 26 104 104 13 54 0.767 0.867 0.938 0.947 3.219 1.017 0.129 0 0.767 0.767
12 95 106 54 51 51 12 69 158 173 56 104 104 13 80 0.815 0.797 0.873 0.813 2.669 0.823 0.316 0 0.815 0.815
13 125 133 59 51 51 12 83 290 316 123 104 104 12 96 0.398 0.387 0.453 0.389 2.532 0.332 0.456 0 0.398 0.398
14 106 117 54 51 51 14 72 130 136 30 104 104 13 49 2.115 2.063 1.720 1.868 3.224 3.955 0.146 0 2.115 2.115
15 517 661 430 51 51 13 98 186 209 72 104 104 14 90 5.683 5.810 6.618 5.819 2.528 8.368 0.415 0 5.683 5.683
16 190 196 69 51 51 12 99 117 117 19 104 104 12 29 10.692 11.154 5.610 7.037 2.483 26.768 0.031 0 10.692 10.692
17 56 60 22 51 51 13 18 102 102 17 104 104 12 4 -2.500 -4.500 1.233 1.135 3.884 0.332 0.032 -50 -2.500
18 53 58 30 51 51 12 13 96 98 26 104 104 13 6 -0.250 -1.167 0.522 0.515 3.348 0.486 0.002 -50 -0.250
19 46 48 13 51 51 13 1 111 112 12 104 104 13 7 -0.714 -0.375 1.000 0.956 2.970 1.053 0.003 -50 -0.714
20 51 53 14 51 51 16 1 116 116 17 104 104 22 3 0.000 0.167 0.908 0.819 3.237 0.120 0.009 -50 0.000

Total number of rows: 6979

Table truncated, full table size 739 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap