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Sample GSM84637 Query DataSets for GSM84637
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, time 21 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 21 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 221 247 100 55 55 18 98 171 180 49 93 93 12 95 2.128 2.207 2.076 2.267 1.716 2.375 0.618 0 2.128 2.128
2 53 56 20 55 55 19 2 97 97 11 93 93 15 1 -0.500 0.250 1.500 1.497 2.751 12.444 0.004 -50 -0.500
3 97 103 37 55 55 19 51 183 186 35 93 93 19 96 0.467 0.516 0.471 0.421 2.573 0.520 0.318 0 0.467 0.467
4 3474 3650 1108 55 55 21 100 896 935 269 93 93 17 100 4.258 4.270 4.352 4.251 1.347 4.392 0.817 0 4.258 4.258
5 301 314 90 55 55 32 100 178 180 24 93 93 17 98 2.894 2.977 2.870 2.940 1.467 3.630 0.717 0 2.894 2.894
6 92 99 41 55 55 28 30 97 101 20 93 93 16 9 9.250 5.500 3.333 3.298 4.307 6.968 0.049 0 9.250 9.250
7 238 265 111 55 55 18 97 591 653 199 93 93 16 100 0.367 0.375 0.371 0.351 1.584 0.336 0.692 0 0.367 0.367
8 595 681 295 55 55 253 55 518 568 175 93 93 744 0 1.271 1.318 1.386 1.199 1.980 1.357 0.658 0 1.271 1.271
9 90 99 44 55 55 18 48 118 119 20 93 93 17 22 1.400 1.692 1.721 1.564 3.280 3.825 0.147 0 1.400 1.400
10 217 216 69 55 55 30 98 186 189 35 93 93 24 93 1.742 1.677 1.699 1.667 1.658 2.371 0.441 0 1.742 1.742
11 87 98 44 55 55 28 28 139 140 23 93 93 18 69 0.696 0.915 0.782 0.731 3.272 1.989 0.217 0 0.696 0.696
12 151 176 95 55 55 18 85 147 165 52 93 93 13 84 1.778 1.681 1.775 1.647 2.930 2.282 0.376 0 1.778 1.778
13 200 204 79 55 55 17 99 286 321 109 93 93 18 100 0.751 0.654 0.683 0.618 1.752 0.598 0.537 0 0.751 0.751
14 128 139 55 55 55 16 86 118 124 29 93 93 18 34 2.920 2.710 2.880 2.747 3.116 9.281 0.042 0 2.920 2.920
15 887 1029 528 55 55 16 100 218 230 66 93 93 13 100 6.656 7.109 7.008 6.711 1.833 9.952 0.516 0 6.656 6.656
16 220 236 84 55 55 21 98 106 108 19 93 93 12 26 12.692 12.067 9.744 10.714 2.563 39.566 0.023 0 12.692 12.692
17 99 97 33 55 55 24 40 101 103 18 93 93 17 5 5.500 4.200 3.325 3.495 3.308 0.031 0.002 0 5.500 5.500
18 59 62 21 55 55 19 8 95 96 20 93 93 17 3 2.000 2.333 0.735 0.767 3.888 6.244 0.001 -50 2.000
19 54 56 17 55 55 16 3 105 105 12 93 93 13 8 -0.083 0.083 1.000 1.016 4.241 7.051 0.004 -50 -0.083
20 54 56 15 55 55 19 1 99 100 12 93 93 14 5 -0.167 0.143 1.000 0.988 3.710 0.060 0.001 -50 -0.167

Total number of rows: 6979

Table truncated, full table size 726 Kbytes.




Supplementary data files not provided
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