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Status
Public on Jan 20, 2012
Title
HS578T, copy number variation SNP6.0 WYETH_NCI50
Sample type
genomic
Source name
HS578T
Organism
Homo sapiens Characteristics
cell line: HS578T
Extracted molecule
genomic DNA
Extraction protocol
DNA were isolated using an DNeasy kit (Qiagen, Germantown, MD).
Label
biotin
Label protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Hybridization protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Scan protocol
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
Data processing
Affymetrix SNP6.0 data were processed using the aroma.affymetrix R package according to the methods of H. Bengtsson et al., (Bengtsson, Irizarry et al. 2008 [PMID 18204055]).
Submission date
Dec 08, 2011
Last update date
Jan 20, 2012
Contact name
Keith A Ching
E-mail(s)
keith.ching@pfizer.com Organization name
Pfizer, Inc.
Department
Computational Sciences
Street address
10777 Science Center Dr.
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL6801 Series (1)
GSE34211 Pfizer Molecular Profile Data for Cell Lines
Data table header descriptions ID_REF PROBE_DESIGN_ID
VALUE Normalized probeset summaries CES (chip effects set)
Data table ID_REF VALUE SNP_A-2131660
4340.85009765625
SNP_A-1967418
1335.68579101562
SNP_A-1969580
6188.69677734375
SNP_A-4263484
3451.57006835938
SNP_A-1978185
2377.7421875
SNP_A-4264431
2526.65673828125
SNP_A-1980898
1883.69384765625
SNP_A-1983139
3498.4658203125
SNP_A-4265735
1403.40612792969
SNP_A-1995832
1707.32604980469
SNP_A-1995893
3354.95166015625
SNP_A-1997689
4932.6181640625
SNP_A-1997709
2477.88256835938
SNP_A-1997896
3072.5087890625
SNP_A-1997922
2226.08740234375
SNP_A-2000230
3618.17358398438
SNP_A-2000332
5584.79638671875
SNP_A-2000337
3673.89892578125
SNP_A-2000342
2986.36865234375
SNP_A-4268172
1216.396484375
1877772 52612 Kbytes .Supplementary file Size Download File type/resource GSM846359_HS578T.CEL.gz
33.9 Mb
(ftp) (http) CEL
Processed data included within Sample table
