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Status |
Public on Jan 20, 2012 |
Title |
SUM52PE, gene expression array U133Plus2 replicate 1 |
Sample type |
RNA |
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Source name |
SUM52PE
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Organism |
Homo sapiens |
Characteristics |
cell line: SUM52PE
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Extracted molecule |
total RNA |
Extraction protocol |
RNA were isolated using an RNeasy kit (Qiagen, Germantown, MD).
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Label |
biotin
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Label protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
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Hybridization protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
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Scan protocol |
Protocol per manufacturer's protocol (Affymetrix, Santa Clara, CA).
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Data processing |
Data were normalized using Bioconductor and the R package gcrma.
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Submission date |
Dec 06, 2011 |
Last update date |
Jan 20, 2012 |
Contact name |
Keith A Ching |
E-mail(s) |
keith.ching@pfizer.com
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Organization name |
Pfizer, Inc.
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Department |
Computational Sciences
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Street address |
10777 Science Center Dr.
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City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121 |
Country |
USA |
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Platform ID |
GPL570 |
Series (1) |
GSE34211 |
Pfizer Molecular Profile Data for Cell Lines |
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Data table header descriptions |
ID_REF |
PROBE_DESIGN_ID |
VALUE |
log2R gcRMA normalized |
Data table |
ID_REF |
VALUE |
1007_s_at |
12.7280274283923 |
1053_at |
11.627004479943 |
117_at |
2.67762777272572 |
121_at |
6.4400665338816 |
1255_g_at |
2.05823886354153 |
1294_at |
2.04883861931146 |
1316_at |
7.33813709059739 |
1320_at |
3.01584709365398 |
1405_i_at |
3.91206045482509 |
1431_at |
2.87635201839861 |
1438_at |
5.03894887397509 |
1487_at |
9.33445004536451 |
1494_f_at |
2.31493536634288 |
1552256_a_at |
10.2134543438198 |
1552257_a_at |
10.5550992646527 |
1552258_at |
3.28847759230711 |
1552261_at |
2.71113857905889 |
1552263_at |
5.94219062656936 |
1552264_a_at |
7.77066132571463 |
1552266_at |
2.84300467470462 |
Total number of rows: 54675
Table truncated, full table size 1478 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM844711_SUM52PE_1_Good_BREAST_WYETH.CEL.gz |
7.3 Mb |
(ftp)(http) |
CEL |
Processed data included within Sample table |
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