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Status |
Public on Jul 04, 2024 |
Title |
Cervical_5wk_SCA7_1 |
Sample type |
SRA |
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Source name |
Cervical spinal cord
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Organism |
Mus musculus |
Characteristics |
tissue: Cervical spinal cord genotype: SCA7 266Q/5Q age: 5 weeks
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Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using Qiagen QIA RNeasy mini kit Library was contructed by Standard Illumina hybridization and scannig protocol
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
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Description |
E2526-CSC_S27_merged
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Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R Assembly: mm10 Supplementary files format and content: text file contains raw count of samples
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Submission date |
Jul 03, 2024 |
Last update date |
Jul 04, 2024 |
Contact name |
Debolina D Biswas |
Organization name |
Duke Univeristy
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Street address |
203, Research Drive, Room 141
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City |
Durham |
State/province |
North Carolina |
ZIP/Postal code |
27710 |
Country |
USA |
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Platform ID |
GPL24247 |
Series (1) |
GSE271392 |
Transcriptomic profiling of medulla and cervical spinal cord to study respiratory neuropathology in Spinocerebellar ataxia type 7 |
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Relations |
BioSample |
SAMN42277653 |
SRA |
SRX25193463 |
Supplementary file |
Size |
Download |
File type/resource |
GSM8376064_E2526-CSC_S27_merged_counts.txt.gz |
149.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
Raw data are available in SRA |
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