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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 04, 2024 |
| Title |
Cervical_5wk_SCA7_1 |
| Sample type |
SRA |
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| Source name |
Cervical spinal cord
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| Organism |
Mus musculus |
| Characteristics |
tissue: Cervical spinal cord
genotype: SCA7 266Q/5Q
age: 5 weeks
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Qiagen QIA RNeasy mini kit
Library was contructed by Standard Illumina hybridization and scannig protocol
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
E2526-CSC_S27_merged
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| Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R
Assembly: mm10
Supplementary files format and content: text file contains raw count of samples
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| Submission date |
Jul 03, 2024 |
| Last update date |
Jul 04, 2024 |
| Contact name |
Debolina D Biswas |
| Organization name |
Duke Univeristy
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| Street address |
203, Research Drive, Room 141
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| City |
Durham |
| State/province |
North Carolina |
| ZIP/Postal code |
27710 |
| Country |
USA |
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| Platform ID |
GPL24247 |
| Series (1) |
| GSE271392 |
Transcriptomic profiling of medulla and cervical spinal cord to study respiratory neuropathology in Spinocerebellar ataxia type 7 |
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| Relations |
| BioSample |
SAMN42277653 |
| SRA |
SRX25193463 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8376064_E2526-CSC_S27_merged_counts.txt.gz |
149.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
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