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GEO accession:
Sample GSM833446
Query DataSets for GSM833446
Status
Public on Dec 01, 2012
Title
Total RNA at ZT18 Sample 1
Sample type
RNA
Source name
Liver
Organism
Mus musculus
Characteristics
sample type: Total RNA
time: ZT18
tissue: liver
age: 12 weeks
strain: C57BL/6
gender: male
Extracted molecule
total RNA
Extraction protocol
RNA extract by trisol.
Label
Biotin
Label protocol
Affymetrix
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Data processing
MAS5
Submission date
Nov 16, 2011
Last update date
Dec 01, 2012
Contact name
Frédéric Gachon
E-mail(s)
frederic.gachon@uq.edu.au
Phone
+41 791926057
Organization name
University Of Queensland
Department
Institute for Molecular Bioscience
Street address
306 Carmody Road
City
St Lucia
State/province
QLD
ZIP/Postal code
4072
Country
Australia
Platform ID
GPL1261
Series (1)
GSE33726
The circadian clock coordinates ribosome biogenesis.
Data table header descriptions
ID_REF
VALUE
Signal intensity
ABS_CALL
Present, Marginal or Absent
DETECTION P-VALUE
P-value for the call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
131.98
P
0.000195116
AFFX-BioB-M_at
282.524
P
4.42873e-05
AFFX-BioB-3_at
144.343
P
4.42873e-05
AFFX-BioC-5_at
380.027
P
4.42873e-05
AFFX-BioC-3_at
491.053
P
9.4506e-05
AFFX-BioDn-5_at
884.263
P
4.42873e-05
AFFX-BioDn-3_at
1699.64
P
5.16732e-05
AFFX-CreX-5_at
5765.81
P
5.16732e-05
AFFX-CreX-3_at
6522.82
P
4.42873e-05
AFFX-DapX-5_at
93.4315
P
9.4506e-05
AFFX-DapX-M_at
221.655
P
0.000856509
AFFX-DapX-3_at
300.032
P
5.16732e-05
AFFX-LysX-5_at
21.1127
P
0.000509415
AFFX-LysX-M_at
33.8197
P
0.00762003
AFFX-LysX-3_at
77.8814
P
0.000662269
AFFX-PheX-5_at
14.6318
P
0.0125468
AFFX-PheX-M_at
15.7914
P
0.0200219
AFFX-PheX-3_at
52.7789
P
0.00401721
AFFX-ThrX-5_at
21.9783
P
0.00618711
AFFX-ThrX-M_at
28.1543
P
0.0166701
Total number of rows:
45101
Table truncated, full table size
1377 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM833446_20091014_ZT18_1_2_ARNtotal__Mouse430_2_.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
GSM833446_20091014_ZT18_1_2_ARNtotal__Mouse430_2_.mas5.CHP.gz
397.2 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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