|
| Status |
Public on May 28, 2024 |
| Title |
HD (HDVax treated CD4+ T cells from T3 TILs) FBC |
| Sample type |
SRA |
| |
|
| Source name |
Tumor
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Tumor
cell line: T3 Sarcoma
cell type: Tumor antigen specific CD4 T cells
genotype: WT mice
treatment: vaccines containing high doses (15 ug) of mItgb1 SLP
|
| Extracted molecule |
protein |
| Extraction protocol |
Live sorted cells were processed by the Genome Institute at Washington University
Library construction was generated using 10x libraries using 10X 5'v2 Single Cell RNAseq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
other |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
10x Data was processed with the Cell Ranger pipeline, version 6.1.1. The downstream analysis was performed using the Seurat package.
Assembly: mm10
Supplementary files format and content: Comma separated files and matrix files
|
| |
|
| Submission date |
May 24, 2024 |
| Last update date |
May 28, 2024 |
| Contact name |
Vladimir Sukhov |
| E-mail(s) |
sukhov@wustl.edu
|
| Organization name |
Washington University in St. Louis
|
| Department |
Immunology
|
| Street address |
660. S Euclid Ave.
|
| City |
St. Louis |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE268301 |
Single-cell RNA sequencing of antigen specific CD4+ T cells induced by high vs low doses of MHC-II restricted neoantigens |
| GSE268302 |
RNA sequencing of antigen specific CD4+ T cells induced by high vs low doses of MHC-II restricted neoantigens |
|
| Relations |
| BioSample |
SAMN41524108 |
| SRA |
SRX24684153 |
