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Sample GSM822278 Query DataSets for GSM822278
Status Public on Oct 25, 2011
Title UT-A_ChipSeq_GM19238_CTCF
Sample type SRA
 
Source name GM19238
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment: Epstein-Barr Virus transformed
treatment: None
treatment description: No special treatment or protocol applies
antibody antibodydescription: Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
controlid: generic_female
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
antibody targetdescription: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname: Millipore
antibody vendorid: 07-729
controlid: generic_female
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
 
Submission date Oct 25, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE33213 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
Relations
SRA SRX102979
BioSample SAMN00744149
Named Annotation GSM822278_hg19_wgEncodeOpenChromChipGm19238CtcfBaseOverlapSignal.bigWig
Named Annotation GSM822278_hg19_wgEncodeOpenChromChipGm19238CtcfSig.bigWig

Supplementary file Size Download File type/resource
GSM822278_hg19_wgEncodeOpenChromChipGm19238CtcfBaseOverlapSignal.bigWig 153.6 Mb (ftp)(http) BIGWIG
GSM822278_hg19_wgEncodeOpenChromChipGm19238CtcfPk.narrowPeak.gz 1.1 Mb (ftp)(http) NARROWPEAK
GSM822278_hg19_wgEncodeOpenChromChipGm19238CtcfSig.bigWig 3.9 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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