|
| Status |
Public on Oct 02, 2012 |
| Title |
5655508058_B |
| Sample type |
RNA |
| |
|
| Source name |
primary breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
sample_name: i4
expt_name: Dec Trial
run_date: Dec-10
tissue_type: FFPE tissue sample
heat_treated: no
ct_mean: --
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Using formalin-fixed, paraffin-embedded HCC tissues, total RNA was extracted using Roche High Pure FFPE Kit.
|
| Label |
Cy5
|
| Label protocol |
Refer to the Illumina beadarray Assay System Manual.
|
| |
|
| Hybridization protocol |
Refer to the Illumina beadarray Assay System Manual.
|
| Scan protocol |
Refer to the Illumina beadarray Assay System Manual.
|
| Description |
replicate 1
|
| Data processing |
Processed data were log2-transformed then quantile normalized using the lumi Bioconductor package.
|
| |
|
| Submission date |
Sep 29, 2011 |
| Last update date |
Oct 02, 2012 |
| Contact name |
Amy McCart Reed |
| Organization name |
University of Queensland
|
| Department |
UQ Centre for Clinical Research
|
| Street address |
Royal Brisbane & Women's Hospital Campus
|
| City |
Herston |
| State/province |
Queensland |
| ZIP/Postal code |
4029 |
| Country |
Australia |
| |
|
| Platform ID |
GPL13938 |
| Series (2) |
| GSE32488 |
Expression profiling of formalin-fixed, paraffin-embedded (FFPE) breast cancer metastases of the lymph node and autopsy tissues [DASL HT-12 samples] |
| GSE32490 |
Expression profiling of formalin-fixed, paraffin-embedded (FFPE) breast cancer metastases of the lymph node and autopsy tissues |
|
