GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM803542 Query DataSets for GSM803542
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_H1-hESC_p300_v041610.2
Sample type SRA
Source name H1-hESC
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription: EP300(c-20)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-585
controlid: SL1398
labexpid: SL2250,SL1883
replicate: 1,2
softwareversion: MACS
antibody: p300
antibody antibodydescription: Rabbit Polyclonal
antibody targetdescription: EP300(c-20)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-585
treatment: None
treatment description: No special treatment or protocol applies
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1398
labexpid: SL2250
replicate: 1
replicate description: tier 1
Biomaterial provider WiCell Research Institute
Treatment protocol None
Growth protocol missing
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100587
BioSample SAMN00738504
Named Annotation GSM803542_hg19_wgEncodeHaibTfbsH1hescP300V0416102RawRep1.bigWig
Named Annotation GSM803542_hg19_wgEncodeHaibTfbsH1hescP300V0416102RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803542_hg19_wgEncodeHaibTfbsH1hescP300V0416102PkRep1.broadPeak.gz 43.1 Kb (ftp)(http) BROADPEAK
GSM803542_hg19_wgEncodeHaibTfbsH1hescP300V0416102PkRep2.broadPeak.gz 171.6 Kb (ftp)(http) BROADPEAK
GSM803542_hg19_wgEncodeHaibTfbsH1hescP300V0416102RawRep1.bigWig 2.7 Mb (ftp)(http) BIGWIG
GSM803542_hg19_wgEncodeHaibTfbsH1hescP300V0416102RawRep2.bigWig 9.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap