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Sample GSM803522 Query DataSets for GSM803522
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_T-47D_p300_DMSO_0.02pct_v041610.2
Sample type SRA
 
Source name T-47D
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: epithelial cell line derived from a mammary ductal carcinoma.
antibody antibodydescription: Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription: EP300(c-20)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-585
treatment description: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)
controlid: SL1881
labexpid: SL3015,SL2633
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-585
treatment: DMSO_0.02pct
treatment description: 1 h with 0.02% DMSO (Myers)
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1881
labexpid: SL2633
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol DMSO_0.02pct
Growth protocol T47D_Myers_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
Relations
SRA SRX100567
BioSample SAMN00738484
Named Annotation GSM803522_hg19_wgEncodeHaibTfbsT47dP300V0416102Dm002p1hRawRep1.bigWig
Named Annotation GSM803522_hg19_wgEncodeHaibTfbsT47dP300V0416102Dm002p1hRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803522_hg19_wgEncodeHaibTfbsT47dP300V0416102Dm002p1hPkRep1.broadPeak.gz 206.2 Kb (ftp)(http) BROADPEAK
GSM803522_hg19_wgEncodeHaibTfbsT47dP300V0416102Dm002p1hPkRep2.broadPeak.gz 172.9 Kb (ftp)(http) BROADPEAK
GSM803522_hg19_wgEncodeHaibTfbsT47dP300V0416102Dm002p1hRawRep1.bigWig 9.0 Mb (ftp)(http) BIGWIG
GSM803522_hg19_wgEncodeHaibTfbsT47dP300V0416102Dm002p1hRawRep2.bigWig 9.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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