|
| Status |
Public on Sep 29, 2011 |
| Title |
HudsonAlpha_ChipSeq_T-47D_RevXlinkChromatin_DMSO_0.02pct_v041610.2 |
| Sample type |
SRA |
| |
|
| Source name |
T-47D
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: epithelial cell line derived from a mammary ductal carcinoma.
treatment description: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)
controlid: SL1881
labexpid: SL1881
cell description: T-47D is a human epithelial cell line derived from an mammary ductal carcinoma.
cell karyotype: cancer
cell sex: F
antibody: RevXlinkChromatin
treatment: DMSO_0.02pct
treatment description: 1 h with 0.02% DMSO (Myers)
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1881
labexpid: SL1881
replicate: 1
replicate description: tier 1
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
DMSO_0.02pct
|
| Growth protocol |
T47D_Myers_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
| |
|
| Submission date |
Sep 28, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
|
| Relations |
| SRA |
SRX100478 |
| BioSample |
SAMN00738395 |
| Named Annotation |
GSM803433_hg19_wgEncodeHaibTfbsT47dRxlchV0416102Dm002p1hRawRep1.bigWig |
