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Sample GSM803433 Query DataSets for GSM803433
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_T-47D_RevXlinkChromatin_DMSO_0.02pct_v041610.2
Sample type SRA
Source name T-47D
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: epithelial cell line derived from a mammary ductal carcinoma.
treatment description: 1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)
controlid: SL1881
labexpid: SL1881
cell description: T-47D is a human epithelial cell line derived from an mammary ductal carcinoma.
cell karyotype: cancer
cell sex: F
antibody: RevXlinkChromatin
treatment: DMSO_0.02pct
treatment description: 1 h with 0.02% DMSO (Myers)
protocol: v041610.2
protocol description: 2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid: SL1881
labexpid: SL1881
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol DMSO_0.02pct
Growth protocol T47D_Myers_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
SRA SRX100478
BioSample SAMN00738395
Named Annotation GSM803433_hg19_wgEncodeHaibTfbsT47dRxlchV0416102Dm002p1hRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM803433_hg19_wgEncodeHaibTfbsT47dRxlchV0416102Dm002p1hRawRep1.bigWig 2.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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