|
| Status |
Public on Jan 13, 2024 |
| Title |
control replicate 1 |
| Sample type |
SRA |
| |
|
| Source name |
Cecum
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Cecum
strain: C57BL/6
genotype: WT
infection: Control
treatment: none
|
| Treatment protocol |
mice infected or not with Citrobacter rodentium and treated with or without GUSi
|
| Growth protocol |
tissue was collected 7 days after infection
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen
Illumina’s Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
A1
|
| Data processing |
Demultiplexing, quality control, and adapter trimming were performed with bcl-convert (v4.1.5)
Assembly: GCF_000001635.27
Supplementary files format and content: tab-delimited text file includes RPKM values for each Sample
|
| |
|
| Submission date |
Jan 09, 2024 |
| Last update date |
Jan 13, 2024 |
| Contact name |
Thibaut Rosay |
| E-mail(s) |
trosay@wisc.edu
|
| Phone |
6082643729
|
| Organization name |
UW Madison
|
| Department |
MMI
|
| Lab |
Sperandio Lab
|
| Street address |
1550 Linden Dr, 3235
|
| City |
Madison |
| State/province |
Wisconsin |
| ZIP/Postal code |
53706 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE252823 |
Effect of microbial β-glucuronidases on Citrobacter rodentium mice infection |
|
| Relations |
| BioSample |
SAMN39326267 |
| SRA |
SRX23147567 |
