|
| Status |
Public on Feb 14, 2024 |
| Title |
barcoded_ss3_cortex |
| Sample type |
SRA |
| |
|
| Source name |
brain
|
| Organism |
Mus musculus |
| Characteristics |
tissue: brain
genotype: wildtype
treatment: lentivirus injection during embryogenesis
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Single cell FACS
Smartseq3
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
smart-seq3 libraries of barcoded single cells isolated from S1 via single-cell sorting of EGFP+ cells into 384-well plates
|
| Data processing |
zUMIs v2.9.7
Assembly: Mus_musculus.GRCm38.91
Supplementary files format and content: RDS, raw counts, UMI-counts, intron, exon, downsampled counts
|
| |
|
| Submission date |
Jan 04, 2024 |
| Last update date |
Feb 14, 2024 |
| Contact name |
Carl-Johan Wilheard Torkel Eriksson |
| Organization name |
Karolinska Institute
|
| Department |
CMB
|
| Lab |
Jonas Frisén
|
| Street address |
Solnavägen 9
|
| City |
Solna |
| State/province |
Stockholm |
| ZIP/Postal code |
17145 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL24247 |
| Series (1) |
| GSE252510 |
Mouse Smartseq3 Data from Mold et al. Clonally Heritable Gene Expression Imparts a Layer of Diversity in Cell Types |
|
| Relations |
| BioSample |
SAMN39255953 |
| SRA |
SRX23100627 |
