|
| Status |
Public on Jun 06, 2024 |
| Title |
WT rep3 (Set3) |
| Sample type |
SRA |
| |
|
| Source name |
retina
|
| Organism |
Mus musculus |
| Characteristics |
tissue: retina
age: E14.5
genotype: WT
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Three independent replicates from WT or Atoh7 REN KO retinae at E14.5 were processed for RNA extraction
Illumina RNA-seq library preparation kit
Bulk RNA-seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
WT rep3
|
| Data processing |
Low quality reads and adapter sequences were trimmed by Trimmomatic
Surviving reads were aligned to mouse reference genome by STAR and gene counts were quantified
Assembly: mm10
Supplementary files format and content: Tab-separated value files for gene count
|
| |
|
| Submission date |
Oct 17, 2023 |
| Last update date |
Jun 06, 2024 |
| Contact name |
Shuchang Liu |
| E-mail(s) |
shl96@pitt.edu
|
| Organization name |
University of Pittsburgh
|
| Street address |
203 Lothrop Street
|
| City |
Pittsburgh |
| State/province |
PA |
| ZIP/Postal code |
15261 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE245541 |
A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis [Set3.Bulk RNA-Seq retina E14.5 WT and Atoh7 Remote Enhancer KO] |
| GSE245549 |
A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis |
|
| Relations |
| BioSample |
SAMN37856147 |
| SRA |
SRX22114240 |
