|
Status |
Public on Feb 03, 2012 |
Title |
male breast cancer 41 |
Sample type |
RNA |
|
|
Source name |
male breast cancer
|
Organism |
Homo sapiens |
Characteristics |
age: 63 size [mm]: 19 er: positive pr: positive year of diagnosis: 1988 hybridization batch: 3 extraction date: 20090609 pathology department: 7 gender: male tissue: breast cancer tumor
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 41
|
Data processing |
The data were normalised using quantile normalisation with BASE2 Combat adjusted one the hybridization batches
|
|
|
Submission date |
Aug 08, 2011 |
Last update date |
Feb 03, 2012 |
Contact name |
Ida Johansson |
E-mail(s) |
ida.johansson@med.lu.se
|
Organization name |
Lund University
|
Department |
Oncology
|
Street address |
Department of Oncology Clinical Sciences Lund University BMC C13
|
City |
Lund |
ZIP/Postal code |
SE-22184 |
Country |
Sweden |
|
|
Platform ID |
GPL6947 |
Series (1) |
GSE31259 |
Gene Expression Profiling of Primary Male Breast Cancers Reveals Two Unique Subgroups and Identifies N-acetyltransferase-1 (NAT1) as a Novel Prognostic Biomarker |
|