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Sample GSM767844 Query DataSets for GSM767844
Status Public on Jul 29, 2011
Title CSHL_RnaSeq_K562_nucleus_longNonPolyA (superseded by GSE90250)
Sample type SRA
 
Source name K562
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: 001N,002N,001N,002N
labexpid: LID9195,LID9196,LID9195,LID9196
labversion: iIDR
readtype: 2x76D
readtype description: Paired 76 nt directed reads
replicate: 1,2
spikeinpool: Nist14
localization description: Large membrane bound part of cell containing chromosomes and the bulk of the cell's DNA
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: 001N
labexpid: LID9195
readtype: 2x76D
readtype description: Paired 76 n.t. directed reads
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Growth protocol K562_protocol.pdf
Extracted molecule nuclear RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
 
Description ****************************
GSM767844 record metadata submitted on Jul 27 2011 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE90250
****************************
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
 
Submission date Jul 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE26284 ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE30567 ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)
Relations
Superseded by GSE90250
SRA SRX085294
BioSample SAMN00678387
Named Annotation GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep1.bigWig
Named Annotation GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep2.bigWig
Named Annotation GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep1.bigWig
Named Annotation GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM767844_hg19_wgEncodeCshlLongRnaSeqK562NucleusPamExonsDeNovo.gff.gz 10.2 Mb (ftp)(http) GFF
GSM767844_hg19_wgEncodeCshlLongRnaSeqK562NucleusPamGeneDeNovoV2.gff.gz 6.8 Mb (ftp)(http) GFF
GSM767844_hg19_wgEncodeCshlLongRnaSeqK562NucleusPamTranscriptDeNovoV2.gtf.gz 7.3 Mb (ftp)(http) GTF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep1.bigWig 309.0 Mb (ftp)(http) BIGWIG
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaMinusRawSigRep2.bigWig 291.1 Mb (ftp)(http) BIGWIG
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep1.bigWig 311.7 Mb (ftp)(http) BIGWIG
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusLongnonpolyaPlusRawSigRep2.bigWig 291.9 Mb (ftp)(http) BIGWIG
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamContigs.bedRnaElements.gz 10.7 Mb (ftp)(http) BEDRNAELEMENTS
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamExonsGencV7.gtf.gz 17.7 Mb (ftp)(http) GTF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamGeneDeNovo.gtf.gz 5.2 Mb (ftp)(http) GTF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamGeneGencV7.gtf.gz 2.0 Mb (ftp)(http) GTF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamJunctions.bedRnaElements.gz 6.2 Mb (ftp)(http) BEDRNAELEMENTS
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamProtocolRep1.pdf.gz 423.1 Kb (ftp)(http) PDF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamProtocolRep2.pdf.gz 429.0 Kb (ftp)(http) PDF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamSpikeinsRep1.spikeins.bam 227.0 Mb (ftp)(http) BAM
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamSpikeinsRep2.spikeins.bam 171.9 Mb (ftp)(http) BAM
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamTranscriptDeNovo.gtf.gz 25.8 Mb (ftp)(http) GTF
GSM767844_wgEncodeCshlLongRnaSeqK562NucleusPamTranscriptGencV7.gtf.gz 4.7 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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