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Sample GSM767839 Query DataSets for GSM767839
Status Public on Jul 29, 2011
Title CSHL_RnaSeq_HUVEC_cytosol_longNonPolyA
Sample type SRA
 
Source name HUVEC
Organism Homo sapiens
Characteristics datatype: RnaSeq
datatype description: Sequencing analysis of RNA expression
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: 029C
labexpid: LID18556
labversion: iIDR
readtype: 2x76D
readtype description: Paired 76 nt directed reads
spikeinpool: Nist14
localization: cytosol
localization description: The fluid between the cells outer membrane and the nucleus
rnaextract: longNonPolyA
rnaextract description: Poly(A)- RNA longer than 200 nt
biorep: 029C
labexpid: LID18556
readtype: 2x76D
readtype description: Paired 76 n.t. directed reads
replicate: 3
replicate description: tier 3
Biomaterial provider Lonza
Growth protocol HUVEC_protocol.pdf
Extracted molecule cytoplasmic RNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer IIx
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeCshlLongRnaSeq
 
Submission date Jul 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (2)
GSE26284 ENCODE Cold Spring Harbor Labs Long RNA-seq
GSE30567 ENCODE Cold Spring Harbor Labs Long RNA-seq (hg19)
Relations
SRA SRX085289
BioSample SAMN00678382
Named Annotation GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaMinusRawSigRep3.bigWig
Named Annotation GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaPlusRawSigRep3.bigWig

Supplementary file Size Download File type/resource
GSM767839_hg19_wgEncodeCshlLongRnaSeqHuvecCytosolPamContigsV2.bedRnaElements.gz 8.7 Mb (ftp)(http) BEDRNAELEMENTS
GSM767839_hg19_wgEncodeCshlLongRnaSeqHuvecCytosolPamExonsDeNovo.gff.gz 3.5 Mb (ftp)(http) GFF
GSM767839_hg19_wgEncodeCshlLongRnaSeqHuvecCytosolPamGeneDeNovoV2.gff.gz 552.1 Kb (ftp)(http) GFF
GSM767839_hg19_wgEncodeCshlLongRnaSeqHuvecCytosolPamTranscriptDeNovoV2.gtf.gz 852.3 Kb (ftp)(http) GTF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaMinusRawSigRep3.bigWig 34.5 Mb (ftp)(http) BIGWIG
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolLongnonpolyaPlusRawSigRep3.bigWig 35.1 Mb (ftp)(http) BIGWIG
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamContigs.bedRnaElements.gz 8.6 Mb (ftp)(http) BEDRNAELEMENTS
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamExonsGencV7.gtf.gz 15.2 Mb (ftp)(http) GTF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamGeneDeNovo.gtf.gz 458.7 Kb (ftp)(http) GTF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamGeneGencV7.gtf.gz 1.4 Mb (ftp)(http) GTF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamJunctions.bedRnaElements.gz 1.8 Mb (ftp)(http) BEDRNAELEMENTS
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamProtocolRep3.pdf.gz 499.8 Kb (ftp)(http) PDF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamProtocolRep4.pdf.gz 494.6 Kb (ftp)(http) PDF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamSpikeinsRep3.spikeins.bam 110.3 Mb (ftp)(http) BAM
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamTranscriptDeNovo.gtf.gz 3.8 Mb (ftp)(http) GTF
GSM767839_wgEncodeCshlLongRnaSeqHuvecCytosolPamTranscriptGencV7.gtf.gz 4.0 Mb (ftp)(http) GTF
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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