|
| Status |
Public on May 22, 2024 |
| Title |
APPNL-G-F mouse without exercise, hippocampus, snRNAseq |
| Sample type |
SRA |
| |
|
| Source name |
Hippocampus
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Hippocampus
Sex: Female
genotype: APPNL-G-F
treatment: No
|
| Treatment protocol |
Mice were housed in cages with running wheel for voluntary exercise for 10 weeks.
|
| Growth protocol |
Eight-week old female WT and NLGF C57BL/6J mice were fed ab lib with normal chow diet
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Hippocampus was isolated immediately on ice, washed with cold D-PBS, and snap-frozen with liquid nitrogen. The Frankenstein' protocol was adopted to isolate the nuclei from frozen tissues (https://www.protocols.io/view/frankenstein-protocol-for-nuclei-isolation-from-f-5jyl8nx98l2w/v2).
Chromium NextGEM SingleCell 3-_GeneExpression_v3.1_DualIndex
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
The demultiplexing, barcoded processing, gene counting and aggregation were made using the Cell Ranger software v3.1.0
Assembly: mm10
Supplementary files format and content: Tab-separated bacode files
Supplementary files format and content: Tab-separated feature files
Supplementary files format and content: Tab-separated matrix files
|
| |
|
| Submission date |
Jul 20, 2023 |
| Last update date |
May 22, 2024 |
| Contact name |
Zheng Sun |
| E-mail(s) |
Zheng.Sun@bcm.edu
|
| Organization name |
Baylor College of Medicine
|
| Street address |
1329 Moursund St
|
| City |
Houston |
| State/province |
Texas |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE237885 |
Gene expression profile at single nuclei level of cells from mouse hippocampus |
| GSE237925 |
Single-nucleus multi-omics dissection of physical exercise effects on neurocognition |
|
| Relations |
| BioSample |
SAMN36661644 |
| SRA |
SRX21114034 |
