|
| Status |
Public on Nov 21, 2023 |
| Title |
DSP-1001660014616-A-C06 |
| Sample type |
SRA |
| |
|
| Source name |
lung: lymphoid follicle
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: lung
cell type: lymphoid follicle
slide name: UA78_UA100_8_29
processing date: BCM-August
panel: (v1.0) Human NGS Whole Transcriptome Atlas RNA
patient: UA100
%laa950 whole.lung: 0.111969
%laa950 lobe: 0.0409762
condition: smoker.control
roi: UA100_ARTERY AND LN_001
scan name: UA78_UA100_8_29
tissue.mount: paraffin
|
| Treatment protocol |
n/a
|
| Growth protocol |
n/a
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Default Nanostring GeoMx extraction protocol
Default Nanostring GeoMx library consruction protocol
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Data processing |
Fastq files were automatically generated with the Illumina BaseSpace Sequence Hub
Supplementary files format and content: Digital count conversion (.dcc) files produced from fastq files using the GeoMx NGS Pipeline 2.3.3.10 desktop application.
|
| |
|
| Submission date |
Jul 12, 2023 |
| Last update date |
Nov 21, 2023 |
| Contact name |
Scott Andrew Ochsner |
| E-mail(s) |
sochsner@bcm.edu
|
| Phone |
713-798-6227
|
| Organization name |
Baylor College of Medicine
|
| Department |
Molecular and Cellular Biology
|
| Lab |
SPP: Signaling Pathways Project
|
| Street address |
One Baylor Plaza
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (2) |
| GSE237120 |
Lymphoid Follicle Spatial Transcriptomics Resolve an Emphysema-Specific B Cell Signature in COPD |
| GSE293001 |
Spatial transcriptomics signatures in COPD |
|
| Relations |
| BioSample |
SAMN36411642 |
| SRA |
SRX20990141 |
