|
| Status |
Public on Nov 09, 2023 |
| Title |
MM.1S cells, Control rep2 |
| Sample type |
SRA |
| |
|
| Source name |
MM.1S
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MM.1S
cell type: human multiple myeloma cells
genotype: control
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Trizol reagent
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
Control 2
|
| Data processing |
(1)Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence;
(2)paired-end clean reads were aligned to the reference genome usinghisat2 (v2.0.5)；
(3)featureCounts (v1.5.0-p3) was used to count the reads numbers mapped to each gene.
Assembly: hg38
Supplementary files format and content: tab-delimited text file includes FPKM values for each Sample.
|
| |
|
| Submission date |
Jun 21, 2023 |
| Last update date |
Nov 09, 2023 |
| Contact name |
Yachun Jia |
| E-mail(s) |
jiayachun@stu.xjtu.edu.cn
|
| Phone |
13619261086
|
| Organization name |
xian jiaotong university
|
| Street address |
No. 157#, The West 5th Road
|
| City |
Xi'an |
| State/province |
None Selected |
| ZIP/Postal code |
710004 |
| Country |
China |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE235403 |
PRMT1 methylation of WTAP promotes multiple myeloma tumorigenesis by activating oxidative phosphorylation via m6A modification of NDUFS6 [RNA-seq] |
| GSE235407 |
PRMT1 methylation of WTAP promotes multiple myeloma tumorigenesis by activating oxidative phosphorylation via m6A modification of NDUFS6 |
|
| Relations |
| BioSample |
SAMN35816661 |
| SRA |
SRX20734647 |
