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Sample GSM749759 Query DataSets for GSM749759
Status Public on Jun 29, 2011
Title Stam_AG10803_CTCF_2
Sample type SRA
Source name AG10803
Organism Homo sapiens
Characteristics cell: AG10803
cell organism: Human
cell description: abdominal skin fibroblasts from apparently heathly 22 year old
cell karyotype: "8% of the cells examined showing random chromosome loss, 2% showing random chromosome gain, and 2% showing 69,XYY" -Coriell
cell lineage: mesoderm
cell sex: M
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 2
Biomaterial provider Corriell;
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX080422
BioSample SAMN00631439
Named Annotation GSM749759_hg19_wgEncodeUwTfbsAg10803CtcfStdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM749759_hg19_wgEncodeUwTfbsAg10803CtcfStdAlnRep2.bam 1.2 Gb (ftp)(http) BAM
GSM749759_hg19_wgEncodeUwTfbsAg10803CtcfStdHotspotsRep2.broadPeak.gz 2.8 Mb (ftp)(http) BROADPEAK
GSM749759_hg19_wgEncodeUwTfbsAg10803CtcfStdPkRep2.narrowPeak.gz 825.8 Kb (ftp)(http) NARROWPEAK
GSM749759_hg19_wgEncodeUwTfbsAg10803CtcfStdRawRep2.bigWig 196.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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