GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM749743 Query DataSets for GSM749743
Status Public on Jun 29, 2011
Title Stam_HBMEC_CTCF_1
Sample type SRA
Source name HBMEC
Organism Homo sapiens
Characteristics cell: HBMEC
cell organism: Human
cell description: Human Brain Microvascular Endothelial Cells
cell sex: U
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 1
Biomaterial provider ScienCell
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
SRA SRX080406
BioSample SAMN00631423
Named Annotation GSM749743_hg19_wgEncodeUwTfbsHbmecCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM749743_hg19_wgEncodeUwTfbsHbmecCtcfStdAlnRep1.bam 835.4 Mb (ftp)(http) BAM
GSM749743_hg19_wgEncodeUwTfbsHbmecCtcfStdHotspotsRep1.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM749743_hg19_wgEncodeUwTfbsHbmecCtcfStdPkRep1.narrowPeak.gz 1.1 Mb (ftp)(http) NARROWPEAK
GSM749743_hg19_wgEncodeUwTfbsHbmecCtcfStdRawRep1.bigWig 127.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap