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Sample GSM749739 Query DataSets for GSM749739
Status Public on Jun 29, 2011
Title Stam_HeLa-S3_CTCF_2
Sample type SRA
Source name HeLa-S3
Organism Homo sapiens
Characteristics cell: HeLa-S3
cell organism: Human
cell description: cervical carcinoma
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: HeLa-S3_IFN_Crawford:HeLa-S3_IFN_Crawford_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX080402
BioSample SAMN00631419
Named Annotation GSM749739_hg19_wgEncodeUwTfbsHelas3CtcfStdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM749739_hg19_wgEncodeUwTfbsHelas3CtcfStdAlnRep2.bam 399.3 Mb (ftp)(http) BAM
GSM749739_hg19_wgEncodeUwTfbsHelas3CtcfStdHotspotsRep2.broadPeak.gz 2.5 Mb (ftp)(http) BROADPEAK
GSM749739_hg19_wgEncodeUwTfbsHelas3CtcfStdPkRep2.narrowPeak.gz 831.8 Kb (ftp)(http) NARROWPEAK
GSM749739_hg19_wgEncodeUwTfbsHelas3CtcfStdRawRep2.bigWig 85.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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