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Sample GSM749696 Query DataSets for GSM749696
Status Public on Jun 29, 2011
Title Stam_HA-sp_CTCF_1
Sample type SRA
 
Source name HA-sp
Organism Homo sapiens
Characteristics cell: HA-sp
cell organism: Human
cell description: Human astrocytes spinal cord
cell karyotype: normal
cell lineage: Astrocytic
cell sex: U
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 1
Biomaterial provider ScienCell
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:HA-sp_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Submission date Jun 28, 2011
Last update date Aug 26, 2014
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX080359
BioSample SAMN00631377
Named Annotation GSM749696_hg19_wgEncodeUwTfbsHaspCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM749696_hg19_wgEncodeUwTfbsHaspCtcfStdAlnRep1.bam 536.2 Mb (ftp)(http) BAM
GSM749696_hg19_wgEncodeUwTfbsHaspCtcfStdHotspotsRep1.broadPeak.gz 2.1 Mb (ftp)(http) BROADPEAK
GSM749696_hg19_wgEncodeUwTfbsHaspCtcfStdPkRep1.narrowPeak.gz 733.5 Kb (ftp)(http) NARROWPEAK
GSM749696_hg19_wgEncodeUwTfbsHaspCtcfStdRawRep1.bigWig 124.4 Mb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

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