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Sample GSM749693 Query DataSets for GSM749693
Status Public on Jun 29, 2011
Title Stam_SK-N-SH_RA_CTCF_1
Sample type SRA
 
Source name SK-N-SH_RA
Organism Homo sapiens
Characteristics cell: SK-N-SH_RA
cell organism: Human
cell description: neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: CTCF
antibody description: rabbit polyclonal
antibody target description: CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name: Millipore
replicate: 1
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwTfbs
 
Submission date Jun 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX080356
BioSample SAMN00631374
Named Annotation GSM749693_hg19_wgEncodeUwTfbsSknshraCtcfStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM749693_hg19_wgEncodeUwTfbsSknshraCtcfStdAlnRep1.bam 518.2 Mb (ftp)(http) BAM
GSM749693_hg19_wgEncodeUwTfbsSknshraCtcfStdHotspotsRep1.broadPeak.gz 2.3 Mb (ftp)(http) BROADPEAK
GSM749693_hg19_wgEncodeUwTfbsSknshraCtcfStdPkRep1.narrowPeak.gz 904.9 Kb (ftp)(http) NARROWPEAK
GSM749693_hg19_wgEncodeUwTfbsSknshraCtcfStdRawRep1.bigWig 72.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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