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Sample GSM747100 Query DataSets for GSM747100
Status Public on Sep 27, 2011
Title B-CLL sample 9
Sample type RNA
 
Channel 1
Source name CD5+CD19+ SP B-CLL
Organism Homo sapiens
Characteristics tumor location: PBMC
sorting selection: SP
Extracted molecule total RNA
Extraction protocol Miltenyi Biotec SuperAmp extraction, amplification and purification
Label Cy3
Label protocol 250 ng of each of the cDNAs were used as template for Cy3 and Cy5 labeling which was performed according to Miltenyi Biotec’s undisclosed protocol
 
Channel 2
Source name CD5+CD19+ non-SP B-CLL
Organism Homo sapiens
Characteristics tumor location: PBMC
sorting selection: non-SP
Extracted molecule total RNA
Extraction protocol Miltenyi Biotec SuperAmp extraction, amplification and purification
Label Cy5
Label protocol 250 ng of each of the cDNAs were used as template for Cy3 and Cy5 labeling which was performed according to Miltenyi Biotec’s undisclosed protocol
 
 
Hybridization protocol Hybridization performed per Miltenyi Biotec's standard MACS Molecular Agilent hybridization protocol
Scan protocol Scanned on an Agilent G2505B scanner; Images were quantified using Agilent Feature Extraction Software (v.9.1)
Data processing Agilent Feature Extraction Software (v.9.1) was used for background subtraction
 
Submission date Jun 22, 2011
Last update date Sep 27, 2011
Contact name Aaron E Foster
E-mail(s) afoster@bellicum.com
Phone 832-384-1125
Organization name Bellicum Pharmaceuticals
Department Product Discovery
Street address 2130 W Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL4133
Series (1)
GSE30171 B-cell chronic lymphocytic leukemia side population cells

Data table header descriptions
ID_REF
VALUE Log10 ratio (CD5+CD19+ SP B-CLL/CD5+CD19+ non-SP B-CLL
CH1_SIG_MEAN CD5+CD19+ SP B-CLL
CH2_SIG_MEAN CD5+CD19+ non-SP B-CLL
INV_VALUE Log10 ratio (Cy5/Cy3)

Data table
ID_REF VALUE CH1_SIG_MEAN CH2_SIG_MEAN INV_VALUE
1 0.0710626 271804.6 230777.9 -0.0710626
2 0 16.74956 13.16235 0
3 0 16.8692 13.21478 0
4 0 16.96895 13.25801 0
5 0 17.06135 13.29715 0
6 0 17.14546 13.33186 0
7 0 17.21722 13.36049 0
8 0 17.27974 13.38432 0
9 0 17.32701 13.40114 0
10 0 17.37626 13.4174 0
11 0 17.41168 13.42721 0
12 0.399367 1055.977 421.0053 -0.399366837
13 -0.390442 42.81904 105.2152 0.390441663
14 0.0818988 111.4524 92.29763 -0.081898839
15 0.705165 201.7663 39.78169 -0.705165381
16 0.113708 102.3765 78.79382 -0.113708066
17 -0.336982 1810.527 3933.568 0.336981694
18 -0.128295 1059.131 1423.131 0.128295323
19 -0.448016 5961.835 16726.17 0.4480165
20 0.351924 998.4421 444.016 -0.351924213

Total number of rows: 45015

Table truncated, full table size 1945 Kbytes.




Supplementary file Size Download File type/resource
GSM747100.txt.gz 14.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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