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Sample GSM736634 Query DataSets for GSM736634
Status Public on Jun 03, 2011
Title Stam_HMEC_1
Sample type SRA
Source name HMEC
Organism Homo sapiens
Characteristics cell: HMEC
cell organism: Human
cell description: Human Mammary Epithelial Cells
cell sex: U
replicate: 1
Biomaterial provider Lonza
Growth protocol Cells were grown according to ENCODE cell culture protocols: Duke/UNC/UTA/EBI_Open_Chromatin:HMEC_Crawford_protocol.pdf UW_Stam:HMEC_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069227
BioSample SAMN00622352
Named Annotation GSM736634_hg19_wgEncodeUwDnaseHmecRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736634_hg19_wgEncodeUwDnaseHmecAlnRep1.bam 1.7 Gb (ftp)(http) BAM
GSM736634_hg19_wgEncodeUwDnaseHmecHotspotsRep1.broadPeak.gz 3.9 Mb (ftp)(http) BROADPEAK
GSM736634_hg19_wgEncodeUwDnaseHmecPkRep1.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM736634_hg19_wgEncodeUwDnaseHmecRawRep1.bigWig 187.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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