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Sample GSM736607 Query DataSets for GSM736607
Status Public on Jun 03, 2011
Title Stam_CMK_1
Sample type SRA
 
Source name CMK
Organism Homo sapiens
Characteristics cell: CMK
cell organism: Human
cell description: human acute megakaryocytic leukemia cells, "established from the peripheral blood of a 10-month-old boy with Down's syndrome and acute megakaryocytic leukemia (AML M7) at relapse in 1985" - DSMZ. (PMID: 3016165)
cell sex: M
replicate: 1
Biomaterial provider DSMZ
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:CMK_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069200
BioSample SAMN00622325
Named Annotation GSM736607_hg19_wgEncodeUwDnaseCmkRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736607_hg19_wgEncodeUwDnaseCmkAlnRep1.bam 1.2 Gb (ftp)(http) BAM
GSM736607_hg19_wgEncodeUwDnaseCmkHotspotsRep1.broadPeak.gz 3.2 Mb (ftp)(http) BROADPEAK
GSM736607_hg19_wgEncodeUwDnaseCmkPkRep1.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM736607_hg19_wgEncodeUwDnaseCmkRawRep1.bigWig 126.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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