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Sample GSM736604 Query DataSets for GSM736604
Status Public on Jun 03, 2011
Title Stam_NB4_1
Sample type SRA
Source name NB4
Organism Homo sapiens
Characteristics cell: NB4
cell organism: Human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell sex: U
replicate: 1
Biomaterial provider Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 or Yale (Stanford): National Cell Culture Center
Growth protocol Cells were grown according to ENCODE cell culture protocols: UW_Stam:NB4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069197
BioSample SAMN00622322
Named Annotation GSM736604_hg19_wgEncodeUwDnaseNb4RawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736604_hg19_wgEncodeUwDnaseNb4AlnRep1.bam 1.4 Gb (ftp)(http) BAM
GSM736604_hg19_wgEncodeUwDnaseNb4HotspotsRep1.broadPeak.gz 2.9 Mb (ftp)(http) BROADPEAK
GSM736604_hg19_wgEncodeUwDnaseNb4PkRep1.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM736604_hg19_wgEncodeUwDnaseNb4RawRep1.bigWig 170.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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