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Sample GSM736594 Query DataSets for GSM736594
Status Public on Jun 03, 2011
Title Stam_HA-h_1
Sample type SRA
 
Source name HA-h
Organism Homo sapiens
Characteristics cell: HA-h
cell organism: human
cell description: Human Astrocytes-hippocampal
cell karyotype: Normal
cell lineage: Astrocytic
cell sex: U
replicate: 1
Biomaterial provider ScienCell
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:HAh_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069187
BioSample SAMN00622312
Named Annotation GSM736594_hg19_wgEncodeUwDnaseHahRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736594_hg19_wgEncodeUwDnaseHahAlnRep1.bam 1.3 Gb (ftp)(http) BAM
GSM736594_hg19_wgEncodeUwDnaseHahHotspotsRep1.broadPeak.gz 4.3 Mb (ftp)(http) BROADPEAK
GSM736594_hg19_wgEncodeUwDnaseHahPkRep1.narrowPeak.gz 2.2 Mb (ftp)(http) NARROWPEAK
GSM736594_hg19_wgEncodeUwDnaseHahRawRep1.bigWig 164.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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