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Sample GSM736590 Query DataSets for GSM736590
Status Public on Jun 03, 2011
Title Stam_AG04449_2
Sample type SRA
 
Source name AG04449
Organism Homo sapiens
Characteristics cell: AG04449
cell organism: Human
cell description: Fetal buttock/thigh fibroblast
cell lineage: mesoderm
cell sex: M
replicate: 2
Biomaterial provider Coriell http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=AG04449
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:AG04449_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069183
BioSample SAMN00622308
Named Annotation GSM736590_hg19_wgEncodeUwDnaseAg04449RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736590_hg19_wgEncodeUwDnaseAg04449AlnRep2.bam 1.2 Gb (ftp)(http) BAM
GSM736590_hg19_wgEncodeUwDnaseAg04449HotspotsRep2.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM736590_hg19_wgEncodeUwDnaseAg04449PkRep2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM736590_hg19_wgEncodeUwDnaseAg04449RawRep2.bigWig 171.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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