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Sample GSM736578 Query DataSets for GSM736578
Status Public on Jun 03, 2011
Title Stam_SK-N-SH_RA_2
Sample type SRA
 
Source name SK-N-SH_RA
Organism Homo sapiens
Characteristics cell: SK-N-SH_RA
cell organism: Human
cell description: neuroblastoma cell line, treatment: differentiated with retinoic acid. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:Stam_15_protocols.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069171
BioSample SAMN00622296
Named Annotation GSM736578_hg19_wgEncodeUwDnaseSknshraRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736578_hg19_wgEncodeUwDnaseSknshraAlnRep2.bam 1.3 Gb (ftp)(http) BAM
GSM736578_hg19_wgEncodeUwDnaseSknshraHotspotsRep2.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM736578_hg19_wgEncodeUwDnaseSknshraPkRep2.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM736578_hg19_wgEncodeUwDnaseSknshraRawRep2.bigWig 173.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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