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Sample GSM736574 Query DataSets for GSM736574
Status Public on Jun 03, 2011
Title Stam_HPF_1
Sample type SRA
 
Source name HPF
Organism Homo sapiens
Characteristics cell: HPF
cell organism: Human
cell description: Human Pulmonary Fibroblasts isolated from lung tissue
cell sex: U
replicate: 1
Biomaterial provider ScienCell
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/UW_Stam:HPF_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069167
BioSample SAMN00622293
Named Annotation GSM736574_hg19_wgEncodeUwDnaseHpfRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736574_hg19_wgEncodeUwDnaseHpfAlnRep1.bam 1.0 Gb (ftp)(http) BAM
GSM736574_hg19_wgEncodeUwDnaseHpfHotspotsRep1.broadPeak.gz 2.5 Mb (ftp)(http) BROADPEAK
GSM736574_hg19_wgEncodeUwDnaseHpfPkRep1.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM736574_hg19_wgEncodeUwDnaseHpfRawRep1.bigWig 128.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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