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Sample GSM736570 Query DataSets for GSM736570
Status Public on Jun 03, 2011
Title Stam_SK-N-MC_2
Sample type SRA
Source name SK-N-MC
Organism Homo sapiens
Characteristics cell: SK-N-MC
cell organism: Human
cell description: neuroepithelioma cell line derived from a metastatic supra-orbital human brain tumor, "SK-N-MC was isolated in September of l971 and was found to have moderate dopamine - beta - hydroxylase activity as well as formaldehyde induced fluorescence indicative of intracellular catecholamines." - ATCC. (Biedler, et al. Morphology and Growth, Tumorigenicity, and Cytogenetics of Human Neuroblastoma Cells in Continuous Culture. Cancer Research 33, 2643-2652, November 1973.)
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols:
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069163
BioSample SAMN00622289
Named Annotation GSM736570_hg19_wgEncodeUwDnaseSknmcRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736570_hg19_wgEncodeUwDnaseSknmcAlnRep2.bam 1.2 Gb (ftp)(http) BAM
GSM736570_hg19_wgEncodeUwDnaseSknmcHotspotsRep2.broadPeak.gz 4.6 Mb (ftp)(http) BROADPEAK
GSM736570_hg19_wgEncodeUwDnaseSknmcPkRep2.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM736570_hg19_wgEncodeUwDnaseSknmcRawRep2.bigWig 187.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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