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Sample GSM736560 Query DataSets for GSM736560
Status Public on Jun 03, 2011
Title Stam_HSMM_1
Sample type SRA
 
Source name HSMM
Organism Homo sapiens
Characteristics cell: HSMM
cell organism: Human
cell description: Normal Human Skeletal Muscle Myoblasts
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
replicate: 1
Biomaterial provider Lonza
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/Broad_Histone:HSMM_Bernstein_protocol.pdf Duke/UNC/UTA/EBI_Open_Chromatin:HSMM_HSMMtube_Crawford_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (3)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069153
BioSample SAMN00622278
Named Annotation GSM736560_hg19_wgEncodeUwDnaseHsmmRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736560_hg19_wgEncodeUwDnaseHsmmAlnRep1.bam 1.7 Gb (ftp)(http) BAM
GSM736560_hg19_wgEncodeUwDnaseHsmmHotspotsRep1.broadPeak.gz 3.6 Mb (ftp)(http) BROADPEAK
GSM736560_hg19_wgEncodeUwDnaseHsmmPkRep1.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM736560_hg19_wgEncodeUwDnaseHsmmRawRep1.bigWig 163.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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