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Sample GSM736519 Query DataSets for GSM736519
Status Public on Jun 03, 2011
Title Stam_PANC-1_2
Sample type SRA
 
Source name PANC-1
Organism Homo sapiens
Characteristics biomaterial_type: immortalized cell line
line: PANC-1
cell organism: Human
cell description: pancreatic carcinoma. (PMID: 1140870)
cell karyotype: cancer
cell sex: M
replicate: 2
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: http://genome.ucsc.edu/ENCODE/protocols/cells/human/HudsonAlpha:PANC-1_Myers_protocol.pdf UW_Stam:PANC-1_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDnase
 
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9115
Series (1)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
Relations
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069112
BioSample SAMN00622237
Named Annotation GSM736519_hg19_wgEncodeUwDnasePanc1RawRep2.bigWig

Supplementary file Size Download File type/resource
GSM736519_hg19_wgEncodeUwDnasePanc1AlnRep2.bam 1.1 Gb (ftp)(http) BAM
GSM736519_hg19_wgEncodeUwDnasePanc1HotspotsRep2.broadPeak.gz 4.3 Mb (ftp)(http) BROADPEAK
GSM736519_hg19_wgEncodeUwDnasePanc1PkRep2.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM736519_hg19_wgEncodeUwDnasePanc1RawRep2.bigWig 156.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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