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Sample GSM736501 Query DataSets for GSM736501
Status Public on Jun 03, 2011
Title Stam_Jurkat_1
Sample type SRA
Source name Jurkat
Organism Homo sapiens
Characteristics cell: Jurkat
cell organism: Human
cell description: T lymphoblastoid derived from an acute T cell leukemia, "The Jurkat cell line was established from the peripheral blood of a 14 year old boy by Schneider et al., and was originally designated JM." - ATCC. (PMID: 68013)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: M
replicate: 1
Biomaterial provider ATCC
Growth protocol Cells were grown according to ENCODE cell culture protocols: UW_Stam:Jurkat_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date Jun 02, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (2)
GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Reanalyzed by GSE53962
Reanalyzed by GSE54296
Reanalyzed by GSE59016
SRA SRX069094
BioSample SAMN00622219
Named Annotation GSM736501_hg19_wgEncodeUwDnaseJurkatRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM736501_hg19_wgEncodeUwDnaseJurkatAlnRep1.bam 2.7 Gb (ftp)(http) BAM
GSM736501_hg19_wgEncodeUwDnaseJurkatHotspotsRep1.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM736501_hg19_wgEncodeUwDnaseJurkatPkRep1.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM736501_hg19_wgEncodeUwDnaseJurkatRawRep1.bigWig 249.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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