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Sample GSM733668 Query DataSets for GSM733668
Status Public on Jun 02, 2011
Title Bernstein_HMEC_Control (superseded by GSE136555)
Sample type SRA
Source name HMEC
Organism Homo sapiens
Characteristics donor_id: ENCDO344AAA,ENCDO830BUW
biomaterial_type: primary cell
cell_type: mammary epithelial cell
lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: mammary epithelial cells
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000093
labversion: Illumina_GA2e and Illumina_GA2x
replicate: 1,2
Biomaterial provider Lonza
Growth protocol HMEC_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Description ****************************
GSM733668 record metadata submitted on May 27 2011 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE136555
Data processing For data processing details see:
Submission date May 27, 2011
Last update date Nov 20, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Reanalyzed by GSM936084
Superseded by GSE136555
SRA SRX067419
BioSample SAMN00622089
Named Annotation GSM733668_hg19_wgEncodeBroadHistoneHmecControlStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733668_hg19_wgEncodeBroadHistoneHmecControlStdAlnRep1.bam 293.7 Mb (ftp)(http) BAM
GSM733668_hg19_wgEncodeBroadHistoneHmecControlStdAlnRep2.bam 664.3 Mb (ftp)(http) BAM
GSM733668_hg19_wgEncodeBroadHistoneHmecControlStdSig.bigWig 418.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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