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Sample GSM733663 Query DataSets for GSM733663
Status Public on Jun 02, 2011
Title Bernstein_HSMM_Control (superseded by GSE136426)
Sample type SRA
Source name HSMM
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: skeletal muscle myoblasts
cell lineage: mesoderm
cell sex: U
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000119
replicate: 1,2
Biomaterial provider Refer to the protocol documents for differing sources
Growth protocol HSMM_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Description ****************************
GSM733663 record metadata submitted on May 27 2011 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE136426
Data processing For data processing details see:
Submission date May 27, 2011
Last update date Nov 20, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL10999
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Reanalyzed by GSM936085
Superseded by GSE136426
SRA SRX067414
BioSample SAMN00622084
Named Annotation GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdAlnRep1.bam 431.3 Mb (ftp)(http) BAM
GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdAlnRep2.bam 519.5 Mb (ftp)(http) BAM
GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdSig.bigWig 395.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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