NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM733663 Query DataSets for GSM733663
Status Public on Jun 02, 2011
Title Bernstein_HSMM_Control
Sample type SRA
 
Source name HSMM
Organism Homo sapiens
Characteristics lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: skeletal muscle myoblasts
cell lineage: mesoderm
cell sex: U
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH000119
replicate: 1,2
Biomaterial provider Refer to the protocol documents for differing sources
Growth protocol HSMM_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
 
Data processing For data processing details see: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
 
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL10999
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
Relations
Reanalyzed by GSM936085
SRA SRX067414
BioSample SAMN00622084
Named Annotation GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdAlnRep1.bam 431.3 Mb (ftp)(http) BAM
GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdAlnRep2.bam 519.5 Mb (ftp)(http) BAM
GSM733663_hg19_wgEncodeBroadHistoneHsmmControlStdSig.bigWig 395.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap