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Sample GSM733648 Query DataSets for GSM733648
Status Public on Jun 02, 2011
Title Bernstein_HSMMtube_Control
Sample type SRA
Source name HSMMtube
Organism Homo sapiens
Characteristics donor_id: ENCDO094AAA
biomaterial_type: in vitro differentiated cells
cell_type: myotube
lab: Broad
lab description: Bernstein - Broad Institute
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell organism: human
cell description: skeletal muscle myotubes differentiated from the HSMM cell line
cell lineage: mesoderm
cell sex: U
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEH001001
labversion: Illumina_GA2e and Illumina_GA2x
replicate: 1,2
Biomaterial provider Lonza
Growth protocol HSMMtube_Bernstein_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For extraction protocol details see:
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer II
Data processing For data processing details see:
Submission date May 27, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9115
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
SRA SRX067399
BioSample SAMN00622061
Named Annotation GSM733648_hg19_wgEncodeBroadHistoneHsmmtControlStdSig.bigWig

Supplementary file Size Download File type/resource
GSM733648_hg19_wgEncodeBroadHistoneHsmmtControlStdAlnRep1.bam 1.6 Gb (ftp)(http) BAM
GSM733648_hg19_wgEncodeBroadHistoneHsmmtControlStdAlnRep2.bam 1.2 Gb (ftp)(http) BAM
GSM733648_hg19_wgEncodeBroadHistoneHsmmtControlStdSig.bigWig 791.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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