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Sample GSM7299968 Query DataSets for GSM7299968
Status Public on May 09, 2023
Title Donor AU81710 CAR Stimulated
Sample type RNA
 
Source name Transduced T cells
Organism Homo sapiens
Characteristics donor: Donor 81710
cell type: CAR T cells
condition: CAR, Stimulated, 24hr
Treatment protocol T Cells were stimulated for 24 hours with Milteny Transact then a further 24 hours with IL7 and IL15 and transduced with retrovirus encoding a CD19 CAR or a CD19 CAR + the dSHP module. Four dats following transduction
Growth protocol T Cells were maintained in RPMI medium supplemented with 10% fetal calf serum and 100U/ml IL2
Extracted molecule total RNA
Extraction protocol RNA was extracted using a Qiagen RNAeasy mini kit plus DNAse treatment and frozen at -80C until analysis
Label n/a
Label protocol n/a
 
Hybridization protocol CodeSet Hybridization Setup MAN-10056 (https://www.nanostring.com/download_file/view/863/3778) + nCounter
Scan protocol SPRINTĀ® Profiler User Manual MAN-10017 (https://www.nanostring.com/download_file/view/254/3778)
Description mRNA was extracted following transduction and the indicated treatment of the T cells and assessed for gene expression using Nanostring
Data processing Matrix values values were generated by normalization of geometic means of gene expression to defined housekeeping genes utilizing NSolver 4.0 software
 
Submission date May 05, 2023
Last update date May 10, 2023
Contact name Simon Thomas
E-mail(s) s.thomas@autolus.com
Organization name Autolus
Street address The MediaWorks, 191 Wood Lane
City London
ZIP/Postal code W12 7FP
Country United Kingdom
 
Platform ID GPL32141
Series (1)
GSE231743 RNA Seq comparing HD37 with dSHP2-HD37

Data table header descriptions
ID_REF
VALUE Normalized fold change (Log2) in gene expression

Data table
ID_REF VALUE
NCR3 7.335406924
CCL5 10.08960032
ACOT2 6.56047348
PFKP 10.62990833
NOD2 5.068620383
AKT1 7.47801132
TRBV7-6 6.068620383
PDK3 8.085428671
IL5 11.2756347
CCL8 2.653582884
CD1A 3.528052002
PPAT 9.751614967
PPT2 5.113014503
IL3RA 6.426172388
IFI30 8.465225165
HACD4 7.969487191
TOMM6 9.530099831
MID1IP1 8.823507886
HK3 3.875975306
STAT5A 10.06155872

Total number of rows: 770

Table truncated, full table size 13 Kbytes.




Supplementary file Size Download File type/resource
GSM7299968_20210211_30102545651221-01_Sample11_11.RCC.gz 8.8 Kb (ftp)(http) RCC
Processed data included within Sample table

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