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Sample GSM7299958 Query DataSets for GSM7299958
Status Public on May 09, 2023
Title Donor AU81708 CAR Unstimulated
Sample type RNA
 
Source name Transduced T cells
Organism Homo sapiens
Characteristics donor: Donor AU81708
cell type: CAR T cells
condition: CAR, Unstimulated, 24hr
Treatment protocol T Cells were stimulated for 24 hours with Milteny Transact then a further 24 hours with IL7 and IL15 and transduced with retrovirus encoding a CD19 CAR or a CD19 CAR + the dSHP module. Four dats following transduction
Growth protocol T Cells were maintained in RPMI medium supplemented with 10% fetal calf serum and 100U/ml IL2
Extracted molecule total RNA
Extraction protocol RNA was extracted using a Qiagen RNAeasy mini kit plus DNAse treatment and frozen at -80C until analysis
Label n/a
Label protocol n/a
 
Hybridization protocol CodeSet Hybridization Setup MAN-10056 (https://www.nanostring.com/download_file/view/863/3778) + nCounter
Scan protocol SPRINTĀ® Profiler User Manual MAN-10017 (https://www.nanostring.com/download_file/view/254/3778)
Description mRNA was extracted following transduction and the indicated treatment of the T cells and assessed for gene expression using Nanostring
Data processing Matrix values values were generated by normalization of geometic means of gene expression to defined housekeeping genes utilizing NSolver 4.0 software
 
Submission date May 05, 2023
Last update date May 10, 2023
Contact name Simon Thomas
E-mail(s) s.thomas@autolus.com
Organization name Autolus
Street address The MediaWorks, 191 Wood Lane
City London
ZIP/Postal code W12 7FP
Country United Kingdom
 
Platform ID GPL32141
Series (1)
GSE231743 RNA Seq comparing HD37 with dSHP2-HD37

Data table header descriptions
ID_REF
VALUE Normalized fold change (Log2) in gene expression

Data table
ID_REF VALUE
NCR3 6.901213135
CCL5 13.3658814
ACOT2 7.064711867
PFKP 9.57928504
NOD2 5.626590755
AKT1 7.542759164
TRBV7-6 7.749210041
PDK3 8.460297004
IL5 5.257356945
CCL8 3.479749366
CD1A 4.257356945
PPAT 8.453754158
PPT2 4.842319446
IL3RA 4.131826063
IFI30 7.148127875
HACD4 10.05609874
TOMM6 8.780918901
MID1IP1 8.548911391
HK3 3.994322539
STAT5A 10.01890818

Total number of rows: 770

Table truncated, full table size 13 Kbytes.




Supplementary file Size Download File type/resource
GSM7299958_20210211_30102545651221-01_Sample01_01.RCC.gz 8.7 Kb (ftp)(http) RCC
Processed data included within Sample table

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