|
| Status |
Public on Dec 01, 2023 |
| Title |
FHBT8_B8_papillary |
| Sample type |
SRA |
| |
|
| Source name |
primary mouse bladder urothelial cells
|
| Organism |
Mus musculus |
| Characteristics |
cell line: primary mouse bladder urothelial cells
cell type: bladder tumor cells
histology: Papillary Squamous
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using RNeasy FFPE kit (Qiagen).
The RNA-seq library was prepared using Takara SMARTer Pico kit and sequenced on NovaSeq S4 PE100 by Medgenome company
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
UCSC TOIL processing pipeline was used to align the reads to the reference genome and generating count matrix files.
Assembly: hg38
Supplementary files format and content: tab-delimited text files include raw count values for each Sample
|
| |
|
| Submission date |
Apr 14, 2023 |
| Last update date |
Dec 01, 2023 |
| Contact name |
John K. Lee |
| E-mail(s) |
jklee5@fredhutch.org
|
| Phone |
2066673652
|
| Organization name |
Fred Hutch Cancer Research Ctr
|
| Street address |
1100 Fairview Ave N Rm E2-430
|
| City |
Seattle |
| State/province |
Washington |
| ZIP/Postal code |
98101 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE229780 |
Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations [RNA-Seq] |
| GSE229783 |
Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations |
|
| Relations |
| BioSample |
SAMN34192781 |
| SRA |
SRX19976484 |
