|
| Status |
Public on Jul 04, 2023 |
| Title |
GM12878_rep1 [206375080192_R08C01] |
| Sample type |
genomic |
| |
|
| Source name |
Human cell line DNA
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: GM12878
input_ng: 250
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated from cell lines following Laird et al. 1991 (PMID: 1870982)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Standard Illumina Protocol
|
| Scan protocol |
Standard Illumina Protocol
|
| Description |
Cell line methylation profiles
|
| Data processing |
SeSAMe software v1.17
matrix processed value definition: Normalized average Beta
matrix signal intensities value definition: Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Apr 03, 2023 |
| Last update date |
Jul 04, 2023 |
| Contact name |
Wanding Zhou |
| Organization name |
Children's Hospital of Philadelphia
|
| Department |
Pathology and Lab Medicine
|
| Street address |
3501 Civic Center Blvd
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE228820 |
Evaluating The Infinium Human MethylationEPIC v2 BeadChip |
|
