|
| Status |
Public on Apr 21, 2011 |
| Title |
-N+3h |
| Sample type |
SRA |
| |
|
| Source name |
Arabidopsis thaliana wild-type seedlings
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
ecotype: Columbia (Col-0)
treatment: Nitrogen limiting for 3 hours
|
| Growth protocol |
Nine-day old nutrient-replete and N- and P-limited wild-type Arabidopsis thaliana Col-0 seedlings were grown in sterile liquid cultures as described previously (Scheible et al, Plant Physiol. 2004; Morcuende et al, Plant Cell & Environ. 2007)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
see Pant et al, Plant Physiol. 2009
|
| |
|
| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
small RNA
|
| Data processing |
Removed adaptores. Sequences without adapters and low complexity sequences were discarded.
|
| |
|
| Submission date |
Apr 20, 2011 |
| Last update date |
May 28, 2014 |
| Contact name |
Patrick May |
| E-mail(s) |
patrick.may@uni.lu
|
| Organization name |
University of Luxembourg
|
| Department |
Luxembourg Centre for Systems Biomedicine
|
| Lab |
Bioinformatics Core
|
| Street address |
7, avenue des Hauts-Fourneaux
|
| City |
Esch-Belval |
| State/province |
Luxembourg |
| ZIP/Postal code |
L-4362 |
| Country |
Luxembourg |
| |
|
| Platform ID |
GPL9302 |
| Series (1) |
| GSE28733 |
Small RNA sequencing in nine-day old nutrient-replete and N or P-limited wild type Arabidopsis seedlings |
|
| Relations |
| BioSample |
SAMN02198486 |
