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Sample GSM71142 Query DataSets for GSM71142
Status Public on Aug 25, 2005
Title OWB-R stress replicate 1
Sample type RNA
Source name whole seedling
Organism Hordeum vulgare
Characteristics cv. Oregon Wolfe Barley Recessive
drought stress
Extracted molecule total RNA
Extraction protocol Five seedlings were used for RNA extraction
Label biotin
Label protocol Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description drought stress
Data processing GCOS 1.2
Submission date Aug 19, 2005
Last update date Aug 25, 2005
Contact name xinping cui
Phone 9518272563
Fax 9518273286
Organization name University of California,Riverside
Department Statistics
Street address Department of Statistics, University of California, Riverside
City Riverside
State/province CA
ZIP/Postal code 92521
Country USA
Platform ID GPL1340
Series (1)
GSE3170 Barley single feature polymorphisms and drought stress gene expression

Data table header descriptions
VALUE GCOS1.2-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 155.6 P 0.002023
AFFX-BioB-M_at 110.9 P 0.000581
AFFX-BioB-3_at 86.7 P 0.000258
AFFX-BioC-5_at 365.5 P 0.00007
AFFX-BioC-3_at 420.9 P 0.000044
AFFX-BioDn-5_at 693.3 P 0.000044
AFFX-BioDn-3_at 1854.3 P 0.000147
AFFX-CreX-5_at 3501.8 P 0.000044
AFFX-CreX-3_at 5406.2 P 0.000044
AFFX-DapX-5_at 566.2 P 0.000052
AFFX-DapX-M_at 1535.8 P 0.00007
AFFX-DapX-3_at 3461.9 P 0.000044
AFFX-LysX-5_at 95.4 P 0.00006
AFFX-LysX-M_at 157.8 P 0.000754
AFFX-LysX-3_at 403.3 P 0.000044
AFFX-PheX-5_at 184.2 P 0.00006
AFFX-PheX-M_at 189.9 P 0.000225
AFFX-PheX-3_at 345.3 P 0.00006
AFFX-ThrX-5_at 247.1 P 0.000044
AFFX-ThrX-M_at 426.5 P 0.000044

Total number of rows: 22840

Table truncated, full table size 704 Kbytes.

Supplementary file Size Download File type/resource
GSM71142.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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