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| Status |
Public on Aug 25, 2005 |
| Title |
OWB-R stress replicate 1 |
| Sample type |
RNA |
| |
|
| Source name |
whole seedling
|
| Organism |
Hordeum vulgare |
| Characteristics |
cv. Oregon Wolfe Barley Recessive
drought stress
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Five seedlings were used for RNA extraction
|
| Label |
biotin
|
| Label protocol |
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
drought stress
|
| Data processing |
GCOS 1.2
|
| |
|
| Submission date |
Aug 19, 2005 |
| Last update date |
Aug 25, 2005 |
| Contact name |
xinping cui |
| E-mail(s) |
xinping.cui@ucr.edu
|
| Phone |
9518272563
|
| Fax |
9518273286
|
| Organization name |
University of California,Riverside
|
| Department |
Statistics
|
| Street address |
Department of Statistics, University of California, Riverside
|
| City |
Riverside |
| State/province |
CA |
| ZIP/Postal code |
92521 |
| Country |
USA |
| |
|
| Platform ID |
GPL1340 |
| Series (1) |
| GSE3170 |
Barley single feature polymorphisms and drought stress gene expression |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
GCOS1.2-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
155.6 |
P |
0.002023 |
| AFFX-BioB-M_at |
110.9 |
P |
0.000581 |
| AFFX-BioB-3_at |
86.7 |
P |
0.000258 |
| AFFX-BioC-5_at |
365.5 |
P |
0.00007 |
| AFFX-BioC-3_at |
420.9 |
P |
0.000044 |
| AFFX-BioDn-5_at |
693.3 |
P |
0.000044 |
| AFFX-BioDn-3_at |
1854.3 |
P |
0.000147 |
| AFFX-CreX-5_at |
3501.8 |
P |
0.000044 |
| AFFX-CreX-3_at |
5406.2 |
P |
0.000044 |
| AFFX-DapX-5_at |
566.2 |
P |
0.000052 |
| AFFX-DapX-M_at |
1535.8 |
P |
0.00007 |
| AFFX-DapX-3_at |
3461.9 |
P |
0.000044 |
| AFFX-LysX-5_at |
95.4 |
P |
0.00006 |
| AFFX-LysX-M_at |
157.8 |
P |
0.000754 |
| AFFX-LysX-3_at |
403.3 |
P |
0.000044 |
| AFFX-PheX-5_at |
184.2 |
P |
0.00006 |
| AFFX-PheX-M_at |
189.9 |
P |
0.000225 |
| AFFX-PheX-3_at |
345.3 |
P |
0.00006 |
| AFFX-ThrX-5_at |
247.1 |
P |
0.000044 |
| AFFX-ThrX-M_at |
426.5 |
P |
0.000044 |
Total number of rows: 22840
Table truncated, full table size 704 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM71142.CEL.gz |
3.4 Mb |
(ftp)(http) |
CEL |
| Raw data provided as supplementary file |
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